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Archived Genomes - PSORT-B v.1.1.2

The following Gram-negative bacterial genome RefSeqs from NCBI's Genome database have been analyzed using PSORT-B version 1.1.2. Two files are available for each genome - the inputted FASTA file (accession.faa) and the outputted PSORT-B results, in tab-delimited text format (accession.faa.psort). The tab delimited text file can easily be imported into your favourite spreadsheet or database program.

Important: Precomputed genomes using the current version of PSORT-B are available! Check the PSORT-B v.2.0 Precomputed Genomes for the latest Gram-negative and Gram-positive genomic analyses.

     
Gram-negative bacterial chromosomes:    
  Input PSORT-B Output
Proteobacteria
Alpha subdivision
Agrobacterium tumefaciens str. C58 (Cereon) circular chromosome NC_003062.faa NC_003062.out
Agrobacterium tumefaciens str. C58 (Cereon) linear chromosome NC_003063.faa NC_003063.out
Agrobacterium tumefaciens str. C58 (U. Washington) circular chromosome NC_003304.faa NC_003304.out
Agrobacterium tumefaciens str. C58 (U. Washington) linear chromosome NC_003305.faa NC_003305.out
Bradyrhizobium japonicum USDA 110 NC_004463.faa NC_004463.out
Brucella melitensis 16M chromosome 1 NC_003317.faa NC_003317.out
Brucella melitensis 16M chromosome 2 NC_003318.faa NC_003318.out
Brucella suis 1330 chromosome 1 NC_004310.faa NC_004310.out
Brucella suis 1330 chromosome 2 NC_004311.faa NC_004311.out
Caulobacter crescentus CB15 NC_002696.faa NC_002696.out
Mesorhizobium loti MAFF303099 NC_002678.faa NC_002678.out
Rickettsia conorii Malish 7 NC_003103.faa NC_003103.out
Rickettsia prowazekii Madrid E NC_000963.faa NC_000963.out
Sinorhizobium meliloti 1021 NC_003047.faa NC_003047.out
Beta subdivision
Ralstonia solanacearum GMI1000 NC_003295.faa NC_003295.out
Neisseria meningitidis MC58 NC_003112.faa NC_003112.out
Neisseria meningitidis Z2491 NC_003116.faa NC_003116.out
Gamma subdivision
Buchnera aphidicola str. Ap (Acyrthosiphon pisum) NC_002528.faa NC_002528.out
Buchnera aphidicola str. Bp (Baizongia pistaciae) NC_004545.faa NC_004545.out
Buchnera aphidicola str. Sg (Schizaphis graminum) NC_004061.faa NC_004061.out
Coxiella burnetii RSA 493 NC_002971.faa NC_002971.out
Escherichia coli K12 MG1655 NC_000913.faa NC_000913.out
Escherichia coli O157:H7 Sakai NC_002695.faa NC_002695.out
Escherichia coli O157:H7 EDL933 NC_002655.faa NC_002655.out
Haemophilus influenzae Rd NC_000907.faa NC_000907.out
Pasteurella multocida PM70 NC_002663.faa NC_002663.out
Pseudomonas aeruginosa PA01 NC_002516.faa NC_002516.out
Pseudomonas putida KT2440 NC_002947.faa NC_002947.out
Pseudomonas syringae pv. tomato str. DC3000 NC_004578.faa NC_004578.out
Salmonella enterica subsp. enterica serovar Typhi NC_003198.faa NC_003198.out
Salmonella enterica subsp. enterica serovar Typhi Ty2 NC_004631.faa NC_004631.out
Salmonella typhimurium LT2 SGSC1412 NC_003197.faa NC_003197.out
Shewanella oneidensis (putrefaciens) MR-1 ATCC700550 NC_004347.faa NC_004347.out
Shigella flexneri 2a str. 301 NC_004337.faa NC_004337.out
Xylella fastidiosa CVC 9a5c NC_002488.faa NC_002488.out
Xylella fastidiosa Temecula1 NC_004556.faa NC_004556.out
Vibrio cholerae O1 (El Tor) chromosome 1 NC_002505.faa NC_002505.out
Vibrio cholerae O1 (El Tor) chromosome 2 NC_002506.faa NC_002506.out
Vibrio parahaemolyticus RIMD 2210633 chromosome 1 NC_004603.faa NC_004603.out
Vibrio parahaemolyticus RIMD 2210633 chromosome 2 NC_004605.faa NC_004605.out
Vibrio vulnificus CMCP6 chromosome 1 NC_004459.faa NC_004459.out
Vibrio vulnificus CMCP6 chromosome 2 NC_004460.faa NC_004460.out
Wigglesworthia brevipalpis NC_004344.faa NC_004344.out
Xanthomonas campestris pv. campestris str. ATCC 33913 NC_003902.faa NC_003902.out
Yersinia pestis CO92 (Orientalis) NC_003143.faa NC_003143.out
Yersinia pestis KIM5 P12 (Mediaevalis) NC_004088.faa NC_004088.out
Delta/Epsilon subdivisions
Campylobacter jejuni subsp. jejuni NCTC 11168 NC_002163.faa NC_002163.out
Helicobacter pylori 26695 NC_000915.faa NC_000915.out
Helicobacter pylori J99 NC_000921.faa NC_000921.out
Geobacter sulfurreducens PCA NC_002939.faa NC_002939.out
Other Phyla:
Aquifex aeolicus VF5 NC_000918.faa NC_000918.out
Bacteroides thetaiotaomicron VPI-5482 NC_004663.faa NC_004663.out
Borrelia burgdorferi B31 NC_001318.faa NC_001318.out
Chlamydia muridarum NC_002620.faa NC_002620.out
Chlamydia trachomatis NC_000117.faa NC_000117.out
Chlamydophila caviae GPIC NC_003361.faa NC_003361.out
Chlamydophila pneumoniae AR39 NC_002179.faa NC_002179.out
Chlamydophila pneumoniae CWL029 NC_000922.faa NC_000922.out
Chlamydophila pneumoniae J138 NC_002491.faa NC_002491.out
Chlorobium tepidum TLS NC_002932.faa NC_002932.out
Deinococcus radiodurans R1 chromosome 1 NC_001263.faa NC_001263.out
Deinococcus radiodurans R1 chromosome 2 NC_001264.faa NC_001264.out
Enterococcus faecalis V583 NC_004668.faa NC_004668.out
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 NC_003454.faa NC_003454.out
Leptospira interrogans serovar lai str. 56601 chromosome 1 NC_004342.faa NC_004342.out
Leptospira interrogans serovar lai str. 56601 chromosome 2 NC_004343.faa NC_004343.out
Mycoplasma genitalium NC_000908.faa NC_000908.out
Mycoplasma penetrans NC_004432.faa NC_004432.out
Mycoplasma pneumoniae NC_000912.faa NC_000912.out
Mycoplasma pulmonis NC_002771.faa NC_002771.out
Nostoc sp. PCC 7120 NC_003272.faa NC_003272.out
Synechocystis sp. PCC 6803 NC_000911.faa NC_000911.out
Thermoanaerobacter tengcongensis NC_003869.faa NC_003869.out
Thermosynechococcus elongatus BP-1 NC_004113.faa NC_004113.out
Thermotoga maritima MSB8 NC_000853.faa NC_000853.out
Treponema pallidum Nichols NC_000919.faa NC_000919.out
Ureaplasma urealyticum NC_002162.faa NC_002162.out